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银叶真藓适应极端环境的基因组特征及关键基因的作用机制

银叶真藓适应极端环境的基因组特征及关键基因的作用机制
  • 导航:首页 > 科学基金
  • 批准号:91631109
  • 批准年度: 2016年
  • 学科分类:比较基因组(C060502) |
  • 项目负责人:何奕騉
  • 负责人职称:教授
  • 依托单位:首都师范大学
  • 资助金额:100万元
  • 项目类别:重大研究计划
  • 研究期限:2017年01月01日 至 2019年12月31日
  • 中文关键词: 银叶真藓;适应;极端;基因组
  • 英文关键词:plant;adaptation;genomic sequence;genetic variation;transcriptome

项目摘要

中文摘要

约4.7亿年前陆地先锋植物苔藓登陆,在面临水分温度等迥异的环境胁迫下,藓类演化出极强的适应能力而分布广泛。银叶真藓是世界分布最广的物种之一,在地球两极、赤道、沙漠及青藏高原等极端恶劣环境中皆有分布。关于银叶真藓逆境应答的生理生化特征已有大量研究,但因无其全基因组序列,难于揭示其环境适应的分子机制。我们以纬度(年积温降水量)差异为准,采集近千不同居群材料,分别建立其单株“无菌快繁体系”,获得了遗传背景均一的纯系材料,细胞流式技术测定其全基因组为138Mb;建立了“原生质体再生、PEG介导基因转化、同源重组基因定点敲除”等技术。拟通过全基因组测序、重测序、深度RNA测序,以及全基因组与环境适应的关联分析(GWAS)等,分析银叶真藓适应极端环境的基因组特征,挖掘“关键基因”,并采用分子遗传、生理生化、细胞生物学等技术,验证基因功能,揭示银叶真藓环境适应的分子机制,为植物抗逆遗传改良提供基因资源。

英文摘要

As the progenitors of terrestrial plants, bryophyte inhabitated on land about 4.7 hundred million years ago. They have evolved remarkable adaptability to cope with desiccation and extreme temperatures accompanied with dramatic environmental changes and widely distributed all over the world. Bryum argenteum Hedw. ( Bryaceae ) is a cosmopolitan unisexual species, which even survive extreme environments, such as the polar region, the equator, deserts and Tibetan Plateau. There are plenty of reports on the physiological and biochemical characters of B. argenteum in response to abiotic stresses. However, it will be difficult to address the underlining molecular mechanisms due to lack of genomic sequence information. We have collected nearly one thousand populations of B. argenteum from the different regions at different latitude, and set up the rapid clone regeneration system from a single gametophore to obtain homogeneous genetic background materials of each population. The genome size of B. argenteum is about 138 Mb measured by flow cytometry. We also have established technical platforms of protoplast regeneration, PEG mediated gene transformation and targeted gene knockout by homologous recombination. We are going to characterize the B. argenteum genome and screen for potential key genes involved in stress tolerance by de novo genomic sequencing, genomic resequencing, in-depth RNA sequencing and genome-wide association study (GWAS). Then we will verify the function of these candidate genes with molecular genetic, physiological, biochemical and cell biological tools. Our work will help to reveal the molecular mechanisms of the environmental adaptation of B. argenteum, and provide new gene resources for stress-resistance related plant genetic improvement.

评估说明

    国家自然科学基金项目“银叶真藓适应极端环境的基因组特征及关键基因的作用机制”发布于爱科学iikx,并永久归类于相关科学基金导航中,仅供广大科研工作者查询、学习、选题参考。国科金是根据国家发展科学技术的方针、政策和规划,以及科学技术发展方向,面向全国资助基础研究和应用研究,发挥着促进我国基础研究源头创新的作用。国科金的真正价值在于它能否为科学进步和社会发展带来积极的影响。

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