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sRNA伴侣蛋白Hfq与sRNA RsmY对藤黄绿菌素合成途径转录激活子PltR表达的转录后调控机制

sRNA伴侣蛋白Hfq与sRNA RsmY对藤黄绿菌素合成途径转录激活子PltR表达的转录后调控机制
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  • 批准号:31470196
  • 批准年度: 2014年
  • 学科分类:微生物功能基因(C010301) |
  • 项目负责人:黄显清
  • 负责人职称:副教授
  • 依托单位:上海交通大学
  • 资助金额:84万元
  • 项目类别:面上项目
  • 研究期限:2015年01月01日 至 2018年12月31日
  • 中文关键词: sRNA;Hfq;RsmY;激活;PltR
  • 英文关键词:Pseudomonas;sRNA chaperone Hfq;sRNA(small RNA);Antibiotic biosynthesis;Post-transcriptional regulati

项目摘要

中文摘要

藤黄绿菌素(Plt)是根际假单胞菌合成的一种广谱抗真菌抗生素。课题组前期研究表明,在假单胞菌株M18中存在独特而复杂的Plt合成调控网络。其中,在转录后水平,sRNA伴侣蛋白Hfq强烈负调控plt转录激活子PltR的表达,然而分子机理尚不清楚;sRNA RsmY转录后激活pltR表达,然而,RsmY对pltR的激活途径及机制,RsmY与Hfq在pltR表达调控中的相关性,均不清楚。本项目拟运用基因突变与过表达、lacZ报告分析、RT-PCR、Co-IP、RNA-seq、EMSA、足迹分析、SPR等技术,研究Hfq独自或协助其它反义sRNA对pltR负调控的分子机制;分析Hfq与RsmY的相互作用机制;比较研究RsmY结合的下游翻译阻遏蛋白RsmA与Hfq在pltR mRNA上的调控位点及机制。为阐明Plt合成的转录后调控通路奠定基础,探索sRNA的反义调控机制与结合调控蛋白机制之间的联系。

英文摘要

Pyoluteorin (Plt) is a broad-spectrum antifungal antibiotic produced by rhizosphere biocontrol Pseudomonas. Our extesive in-depth studies have shown that a unique and complex regulatory networks control Plt biosynthesis in Pseudomonas strain M18. The sRNA chaperone Hfq, at the post-transcriptional level, was shown to strongly down-regulate expression of the plt transcriptional activator PltR, however, the underlying molecular mechanism remains unknown. Also, the sRNA RsmY was found to post-transcriptionally activate the pltR expression; however, these remain unclear the activation pathway and mechanism by which RsmY controls the pltR expression and whether the sRNA RsmY is directly correlated with the sRNA chaperone Hfq in the regulation on pltR expression. In this study, through gene mutation or over-expression, lacZ report analysis, RT-PCR, Co-IP (Co-immunoprecipitation), northern blotting, RNA-seq (RNA sequecing), EMSA (Electrophoretic mobility shift assay), footprinting analysis, SPR (Surface plasmon resonance) technology, etc., we will study: (1) molecular mechanism by which Hfq, alone or in incollaboration with sRNA, reugulates on the pltR expression; (2) the interaction mechanism between the sRNA chaperone Hfq and the sRNA RsmY in the regulation of pltR expression; (3) comparison of target sites and regulatoy mechanism between the RsmY-binding downstream translational repressors RsmA and Hfq on the pltR mRNA. This study will lay the foundation for clarifying the post-transcriptional regulatory pathway and mechanism of Plt biosynthesis and exploring the connection between the sRNA-mediated antisense regulation and the sRNA-mediated gene regulation by sequestering regulatory proteins.

评估说明

    国家自然科学基金项目“sRNA伴侣蛋白Hfq与sRNA RsmY对藤黄绿菌素合成途径转录激活子PltR表达的转录后调控机制”发布于爱科学iikx,并永久归类于相关科学基金导航中,仅供广大科研工作者查询、学习、选题参考。国科金是根据国家发展科学技术的方针、政策和规划,以及科学技术发展方向,面向全国资助基础研究和应用研究,发挥着促进我国基础研究源头创新的作用。国科金的真正价值在于它能否为科学进步和社会发展带来积极的影响。

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