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Structural dynamics of proteins: a combined computational and experimental approach.

Structural dynamics of proteins: a combined computational and experimental approach.
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  • 批准号:31150110578
  • 批准年度: 2011年
  • 学科分类:细胞生物物理(C0502) |
  • 项目负责人:Jacques-Philippe Colletie
  • 负责人职称:不详
  • 依托单位:中国科学院上海药物研究所
  • 资助金额:20万元
  • 项目类别:国际(地区)合作与交流项目
  • 研究期限:2012年01月01日 至 2012年12月31日
  • 中文关键词: Structural;combined;computational;experimental;approach.
  • 英文关键词:;;;

项目摘要

中文摘要

Antibiotic uptake into gram-negative bacteria is mainly due to their passive diffusion porins, which are general-diffusion channel-proteins found in their outer-membrane. An ever-increasing number of MDR clinical isolates are reported in which an outer membrane barrier of low permeability is observed. Understanding the structural basis for a decreased antibiotic uptake is therefore determinant in the quest for new, more efficient antimicrobial agents...We have solved the crystalline structures of the two porins of Providencia stuartii, Omp-Pst1 and OmpPst2, from the ATCC strain. Providencia stuartii is a bacterium displaying a stringent multidrug resistance phenotype and that is involved in bacteriuria in patients with long-term indwelling catheters. The two porins display inverted charge distribution inferring that they undertake different functions in the physiology of the organism. Accordingly, it was shown that the contribution of OmpPst1 in antibiotic uptake is much more important than that of OmpPst2. ..We therefore also went on solving the structures of Omp-Pst1 counterparts in two clinical isolates, viz. Omp-Pst1-99645 and Omp-Pst1-NEA16. The two structures therefore point toward a consensus in the adaptive pathway undertaken by clinical strains. In the pore, mutations permit more pronounced anion selectivity and in a tighter constriction zone. To determine whether these mutations were aimed at reducing antibiotic uptake, we have undertaken the characterization of ?-lactams antibiotics transport kinetics for the three Omp-Pst1 variants. Our results point toward a decreased kon for most antibiotics tested.

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